Scaffold Ga0334982_0002106

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0002106
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12372
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012770	Metagenome / Metatranscriptome	277	Y
F020863	Metagenome	221	Y
F085348	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0002106_11052_11423	F012770	N/A	MNIEEEPPHNHCHDCNITFPDSFALIDHYLEEDETFDPYYLLPSGFKLMLGSMLRFLFDNAHDADQIKLITQSTYVTLFASENGYDLVDELVEDMIVKSALQDFDRDLQNLLAEEPDDNESGA
Ga0334982_0002106_5299_5466	F085348	AGGGGG	MTPTGLALKVTNKDGRESFPCYEAYGWDKVNQIISNTLEIEHVLKVEIVDINVLR
Ga0334982_0002106_6673_7008	F020863	GGAG	MQTKMEDLHRLVAVLEECVRPLLEGEEIESPYESMRRPHLVLQEGSKTYGRAFRVHFTGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGSMIAEKLEEEGNE