Scaffold Ga0334982

Basic Information
Taxon OID	3300033981 Open in IMG/M
Scaffold ID	Ga0334982_0001683 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033981 Open in IMG/M

Scaffold ID

Ga0334982_0001683 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13811
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (44.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13811

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (44.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F012113	Metagenome / Metatranscriptome	283	Y
F023585	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0001683_10789_11172	F010463	N/A	MVLAATIHRVKMCEDKLREFEQMVTTLTSTMAQNRAELASKGLEKFVIGVTTPLDIPKELIPTYGKAGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHPTAILFAKKQNFIVRKAKGGSR
Ga0334982_0001683_13170_13643	F007164	AGGA	MSEKQIGMELQKTVKQLEKAKENAIQQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSVTNWTPAQRTQFLEEARPIVEAYKEAGGEL
Ga0334982_0001683_4509_4679	F012113	N/A	MNQILTFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPETTLRKVVDFLSKFSRK
Ga0334982_0001683_7141_7710	F005846	N/A	MTSFPLPARPVGSAVPASHDEFSDGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGNGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINSIWEEMNYQNNKAGEVIWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW
Ga0334982_0001683_7683_7922	F005702	N/A	LAKTEDSLVIIFLVAFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKQPELMLPSKNWVGRN
Ga0334982_0001683_9801_10010	F023585	AGGA	MSVKRLKLLEEFHGIVSKRLKDLFKDFDHAKRENYKDIISHLDYSHRITKELLERAKKYQKIDMEKAKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334982_0001683

Overview

Ecosystem & Geography

Associated Families

Sequences