NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0001419

Scaffold Ga0334982_0001419


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0001419 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15046
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (13.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002778Metagenome / Metatranscriptome530N
F004839Metagenome / Metatranscriptome421N
F025505Metagenome / Metatranscriptome201N
F087195Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0001419_10496_11233F025505N/AMNNLPMIANRVEEKIQDVQLVIQNRELRIFKTGTKEAIPKITHVLNQLLPVYGIEVKPDQLMELIDFVASYKLISVDEIKLAFEKFAKDELNLNDHKLYGKVDLHAIGKILSSYITWRQKIYYAIDSDIMAKKEEEDRIKRLGKVAEDYDKDFDNKLKNFNKTLDEIPIFWYDECVKRGYIKDWFYGEKEELWAEAQEMARNEKPTSDNLIERKIHMRKIEEGNIPRARALAYKLAVWRKVLLRD
Ga0334982_0001419_1563_2099F004839N/AMEKNFTNTQFKWTFESISDNIPTIMLITILLTYGINAYLTAIFLPLDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATIVALIEIFFGLQEHYEGGEYITMFLFVGTIIVFGYLLEINFVDKGVEAYGINEPKIIKRRRRKIIVKNDSEEVPKNFRRNITSFQLSLF
Ga0334982_0001419_5219_5629F002778N/AMKEYNSKMLEIKAFCEEVNAWISVAPSAEHLEECDEYLRQLSAYYSRYTVISGMNESIYSFLMMTCIRDMPEEEYKRVKHSSTLTDFYVKGKYPKATAIFEQCRAVQRLLLVTSDNYRTLLSSFRQERILVGHMTT
Ga0334982_0001419_7649_7897F087195N/AMTQEERQKAISEAFYHIAIYAMVTHTHTRDGLHRLEYMMNIINEIPVIGDTDYSNFNHRYYKGILEDAIKMNKEFNESLTKL
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