Scaffold Ga0334982

Basic Information
Taxon OID	3300033981 Open in IMG/M
Scaffold ID	Ga0334982_0001147 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033981 Open in IMG/M

Scaffold ID

Ga0334982_0001147 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16599
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (70.97%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16599

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (70.97%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F037193	Metagenome / Metatranscriptome	168	Y
F045601	Metagenome	152	N
F082352	Metagenome	113	N
F090072	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0001147_12478_12660	F090072	GGA	MGFKMTEDEIIKAYLSRLGRKGGSVKGPQKVRPKEHYQKAVGIRWAKYRERQTEAQTPKR
Ga0334982_0001147_13893_14294	F082352	AGGA	MNKIKTPDDCGDNKVIFRYDDPIYYIGYYAGQTWNGWDCVRVDKATFDQLRKICEEQGGDVEDYDNAEADEFGLYSLDGHCTHVCGFTHKGIFVTNPFQSDCGRFEADPEKDYGLNHEELVEIFGENYKVLKN
Ga0334982_0001147_3_398	F045601	N/A	ANYLREQGWQKARRSQQFAGNPEGGSGDVVCENFPFHIEGKRCQALKPEEWMEQAKRDCPKGKIPSVFFRRNGRKEWLVIMTADSVCELARQIAPANVTIEYAKTATIAQGFYVKSPAFEDLTPTTINPNK
Ga0334982_0001147_3051_3716	F003304	AGGA	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHNCDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIATDCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTRLSNQIKADEAKLVELGR
Ga0334982_0001147_5927_6115	F037193	AGG	MKSKDELAMQVRKEWDEKGYRWRLWVETGGFRSEIFCYEWNENEYSKCVRELVDHAYQMQSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334982_0001147

Overview

Ecosystem & Geography

Associated Families

Sequences