Scaffold Ga0334982_0000723

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000723
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20387
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (70.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010085	Metagenome / Metatranscriptome	308	Y
F024549	Metagenome / Metatranscriptome	205	Y
F030758	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000723_1586_1786	F024549	N/A	MYRLDTYYDGKLEYTYQFADALQAFEAFAKCYDVGFADELATYNLSLPNGKMYTKNFNRAGFIGGK
Ga0334982_0000723_18684_19040	F030758	GGA	MATENKNFKVKNGINVAGDATFDSNVVLGSTPLRFDTTTNKLQIQLNGTWSPIAFVADIPDMTAEIGFMDIGLAIDYNGLPVYTVQANGVSTTATKFADGGDPSTSTYGLTFDSGVIV
Ga0334982_0000723_9360_9572	F010085	AGGAG	MRQIQYVSQYIALSEDGLVPRLECPMDQGLLQSNLDLEDNIYLYCLSCSYKKFIGEKLYSDIKERVDKNV