Scaffold Ga0334982_0000562

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000562
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22962
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (43.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009805	Metagenome / Metatranscriptome	312	Y
F043349	Metagenome	156	Y
F090274	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000562_12590_12745	F009805	GGA	MGEWINSLQNRMSNAVDGDCFYLPTAMHLHAFMLLKEQKFADKNFKVEVKQ
Ga0334982_0000562_19240_19467	F090274	N/A	MGSDNIQTTTRKEDWDDFFAGWDDPQDAIEAMDSYAERVRVACELSGREIKKTTKRLDDTTKEKIRVTVEFEFDR
Ga0334982_0000562_19457_19687	F043349	N/A	LTGRFGPKTQAIAIRQVRQWMKELPEGDSMCLRCESALPDKQFEVWKKWFLKHEDNRWEISDEHKSFFFYKSRFVE