NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0000390

Scaffold Ga0334982_0000390


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0000390 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27110
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (82.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012451Metagenome / Metatranscriptome280Y
F035228Metagenome / Metatranscriptome172Y
F040602Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0000390_1348_1644F040602N/AMAQTNDQMFVALMAMYPEAGDTLADLLYTHWSTVGLQYRGSLQYQYYKEAGAAGSTWGDVANEFWSDGDFVVSNLEQEDGTDFLLEDGGFVLMEIGNG
Ga0334982_0000390_13814_14275F035228GGAGMSKKSDYDIGPMPHDWQTDLSFGHKGEKLVSEFLGKISSGAFEVKTDRYRNGRMVLEMVQNPRRRLDDNGEPFWQPSGLAVTKAEWWVYVYALDGAFVIVSVPRLKRYLKANKDRFNPKAYHKFAWRSGNPSMGYLLQPEDVMDMMINEKYDS
Ga0334982_0000390_25103_25816F012451GAGGMAYATMTATTLRQTVRDITDLDNEDLPDSLLNVYIRDGYYRILDMEKRWSFLEKSFTFNTVAEQREYTISSFTADPIGQVISIVDPTGTGLRLDMVGLDMGENTYIGSYDTSADPLFYAIWEGKIHLFPKPNNVRTLKVRAYREPIDWVTTGGAVDASPSLHFPLVYYACSRVYQRLEDTVMAQEYKRAFDEGVVLAKENIMKPSSHAHLRLSQGQTSGRPTFQDWMRRMGQDLKLN

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