Scaffold Ga0334982_0000376

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000376
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27512
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (67.92%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F025739	Metagenome / Metatranscriptome	200	Y
F027777	Metagenome / Metatranscriptome	193	N
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000376_12772_13446	F041645	GGTGG	MASLVIGSAISSKVLQRQNFNKEPNGLETIIEAYAIQTANRDAVVPEKNTLHSAFSSSTKKYSRMVVESVTTEEQDGGITQMLVTFVGLTTSTGLPPPIVRLIPTEGAGVYGPPLVIEAEYVTDVSETEFMAGQLTSGSGLESSGVFRKNIKMPAVINGTQMPRNPRQTFAFSPQSGFGGGAFFRYDGYCVLSVSCDRRGLFLVARNTYHEVQQIAVAVQGAFS
Ga0334982_0000376_13458_13715	F035669	GAG	MREQQLNELQGTSILTKSFFNKLIRRIECTKPLAGSGITISEKENGFEIASGGAGSVAGYSAITLNVCSNGVPAEIVVLGYAVEE
Ga0334982_0000376_17889_18170	F025739	AGGA	MKKLLTIAVSVIRKSILGFIVASFLCGCVTTRPYDIGQVPNQDSITDFIMRWDKLDRTKASPQEYRELYAQTLKALSRSMEETERCKSRLDQQ
Ga0334982_0000376_18677_19036	F011284	AGCAG	MTSEQGVEKTEQKVFTKKHDLHLTTLQMAAVESMERKYKKGVVEHGGTKLWEMPTARLVENAIEEATDQLTYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPL
Ga0334982_0000376_20820_21389	F005846	N/A	MTSFPLPARPVGSAVPALHDEFSEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYSERMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVVWEGFVMKSLDDGKYPYITNPNYCSPSWQKQRIRW
Ga0334982_0000376_21383_21610	F005702	GAGG	MVIIFLVAFFGLLILQGVRIFAKHIDQQNYDRRQFYLYVAAELDKMDKIVAEGNQPKEPREPELLLPTKNWVGRN
Ga0334982_0000376_21938_22153	F027777	GAGG	MSEELPTFWHQEPAKKKLPNETTDQWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQNRK
Ga0334982_0000376_24459_24854	F010463	AGG	MNDLVLAATIHRVKSCEDKIAQFEQLISTLTAQMAHNRSELASKGLANLVMGTTTPLDIPRELRPTFGKYRARGNRSHNTVQRRWGIWKAQYESGLTVKEIAHAWGCHHSSIVNAKSKNFTARKSTGRGIK
Ga0334982_0000376_5366_6037	F008741	GAG	MSVKTIKYLQRLGDVLRCLPAAKHLADQGHEVFFDCFDQYHGVFDLVSYVKAGSKGDVLDLEIWPNRYSDFIKSRKNWHDFVYSNPEIKEADKTNIVLDRLDDKPAEGLPETYNLVAPFGISQTFYRNPLTLIQDAVKELGKESVFVLCPPDIKIQGLNTYTAQSVEQMVKAIRGAGQFWAVNSSPIIIASAVRRGKESRFWGEKNEAEVQNVFHFEGLTRMD
Ga0334982_0000376_6784_7275	F009142	N/A	MNNSVQINVEDALENLLANIPNLNVYKTNRIGAKLFPSATISASVGGQLLGNYTGVYEVSVSVDYSDTAAKISQEDFDAEYCSIFEAFYSEATPLFTKIQNNIVDTKVYTARITGQTPTIKTAKRAWQRGLNMSLICTPSETDDGLRCLNFYQKENSMYVAVI