NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0000355

Scaffold Ga0334982_0000355


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0000355 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28111
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003640Metagenome / Metatranscriptome475Y
F015965Metagenome250Y
F024254Metagenome206Y
F051880Metagenome / Metatranscriptome143Y
F071957Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0000355_19204_19647F015965AGGMLTDSKKKELSVEAVLLIAAQQTKSKYSAEQVYASLVKEMNMEGTSTYREGNTVFLMHHAKGRVGIFRALNADTARNYLDNSYQFIQDAYKMGFDILVSDFEDPTIMNIFKGISRNPPQEGMGYRAERTQKGFRVTVKLGPARPDKE
Ga0334982_0000355_20753_21037F024254AGAAGGMIEFIEIFNYVAKVARPAHAKVAIADAMENTFQEIGLDSLDGLVMLMYFDDLYGIEDAVSKEWTPASVQELHDLVMANKTKEPASMEEVAEACK
Ga0334982_0000355_21034_21294F003640GGAGGMALAVVYDPRFHTFESWAALMCEAYAGQQLVIPDSRTDWYQWAAGLKAIDVFTNEGIPGPYIYNNWQDWASALVGAVNQPTEGPDQ
Ga0334982_0000355_26795_26965F051880GGAMAMEKITLSTQLVNGILQYLGNQPYAQVAQLIDGIQKEAQAQAQQPVEKVIAEPVN
Ga0334982_0000355_3151_3414F071957GAGGMEMTKQDAELSPLARQLLGNSGAMKLFTQTEFDAALKEAKAEIMAIAIQTSKQAIYIERNACADLALQWSQEELSEAIRHRMRPVND
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