NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0000280

Scaffold Ga0334982_0000280


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0000280 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31052
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (74.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024291Metagenome / Metatranscriptome206Y
F047555Metagenome149Y
F091636Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0000280_10822_11277F047555N/AVSARSTSTSGLTSSVSDHPLSFFFDVGDCTKVWSDRRSFESGYDEVDFAAVGIGTVKLLCIKNLSATNQIALSAGWTGSQFSVFRQDVTSWNFSPMVNLGSLTLRGYPIRERGAFLICCPNSVGFGATAGGSILRIGGTAGQDYEIYVMGN
Ga0334982_0000280_13267_13599F024291AGGAGGMGTSAQGLTFTFGGAAVTVTSVQVNDTQDLLDATHLGVAPNGRRIFVGGFATDREVQIDYISSTILTAGTSGAMSISGPMSFSGNATISSASLGGSVGDFVRGSATFRLA
Ga0334982_0000280_8713_9156F091636AGGAGMIHAQNHKVVAELPTAAVGATATATLTIDTIGYDHASVTVIRASNASTVFANVVKVEESDDNSSYSNVTALVGGGTGGFSIPAVSAAGTSSAAVLKMDIDTRAKKRYLKVSYTPGASATVAIVGRLGRGEESPVSASDAGVIGLIKG
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