Scaffold Ga0334982_0000230

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000230
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34044
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (58.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008077	Metagenome / Metatranscriptome	339	Y
F008238	Metagenome / Metatranscriptome	336	Y
F018140	Metagenome / Metatranscriptome	236	Y
F028799	Metagenome	190	Y
F082700	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000230_16881_17114	F018140	AGG	MVDEPKTVGGVFAASLPAALGAGMFAIGALLISMQVQFARVEATVQQMVRAVEELKNDSKAELTLLDQRVRALEMRK
Ga0334982_0000230_19445_19720	F028799	N/A	MTRRPSITDNMTAAELAAWKANNRKQTGAPVIITAAAKPARKSQRQEWQEFRAETLDMIETAKRERHFHILPQLMQRLTTADTMLANRALV
Ga0334982_0000230_23470_23694	F008077	N/A	MNFGQWMAVELSPEQQFEIEKQARALLQSKDAGALAAALLKQTCYQQQLLQQAVNEIARLECELMGFPRTDPPQ
Ga0334982_0000230_23672_23998	F008238	N/A	MTFKLNLSIFKSTKPESKVDFSGMLNVKVEELDAFCAFVMSQTPDQYGSVQVPISGWKKQARSGLNYVSAVAQPPRDWVPPATAQSAAASLAAATDGVVSEFTEADLF
Ga0334982_0000230_5524_5691	F082700	N/A	MATMVDEYHGQGGTYLLDPKTGKRKLIERTEPANPSQPPTEVESDGSDTQKTDPG