Scaffold Ga0334982_0000227

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000227
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34154
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.73%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F001345	Metagenome / Metatranscriptome	718	N
F004837	Metagenome / Metatranscriptome	421	Y
F006105	Metagenome / Metatranscriptome	381	Y
F009057	Metagenome / Metatranscriptome	323	Y
F009318	Metagenome / Metatranscriptome	319	Y
F020667	Metagenome	222	Y
F024098	Metagenome	207	Y
F098895	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000227_13603_15969	F020667	N/A	MSVTLIAYPTATFIDDLTAWNNFNARADADGATAKEDACFDCLYLRFAGLNAMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGALSSGYVYGVVDAVGFSDLTQGNLVAGWWQLGPSIYVKKMVDLIFAQAGFRYSSNFFNSALFNKLVIPYAAGTMPVNLSGSNIFAQATGNTANFIKGANQTLAFPKDTPAPFYDRPGYWVASSSTFVAPALPTRWNVDVTLNVSGSISFSGSIRCNMSIRNITNSTDVSVISNITARTQNQFTVRFENITIPADITANVGFVITADTVVATQNFSVLSGATVQWTCLENPVGIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYTSGVVDWSQKSDENAEQNLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTGNFYGKGDKVVETLCGTLIPASFASDKILGRTWDLEGTRLSGSIKPLQTGYRLAQYNLITGQSPWLYWFGLEEDGFAATTPITALPFVSHIDNPYAPNVDLTFGQPRLVYYNAVNASGNPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNISDFVATTTTPIASDPELLFNGPIDPDPVDPGYEPPVNPELPSEG
Ga0334982_0000227_15966_17114	F024098	N/A	MLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLIAPTAPSLTQTGFADHSGFYSGYRLDFTQEYGNTPAVTGATTTVSGVMAFAGNLEQLELAGWSGGLYFPAGGGFADAVTQSLATNVRRTVYSDSYGWLCQGVGSGFANTQNIIATVTYYTAGGSSVRTYDVSIGSASGSTIFRFGAGPLNITALTSGQCSDGSAGSVNFPTAEGSYYTIFFADDGGNATVPFTYVIGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL
Ga0334982_0000227_17986_18552	F000557	N/A	MKLQDLTIDQFQRIAALEFSLVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPALAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELLKAHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ
Ga0334982_0000227_2007_2270	F009057	N/A	MPTFRKFAFPDGATADKLLATLQPLDFAVQVGEIDKAVCVDILFHDTCPEDLAAFVVWPESCGVHSFSGWEEQYAADHKEFATQSQK
Ga0334982_0000227_23207_23470	F004837	N/A	MTQDEYLLATKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYQEADQFAEANHHTFTHALNQSPQR
Ga0334982_0000227_23687_24238	F001345	N/A	MQSADQVILDLYRTGEIRKACLTITGGDPLWRDLEQECVLILLEKDPAKILQIQSQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELDPDSPIPQAEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQSHGHADISPAD
Ga0334982_0000227_25925_26116	F009318	N/A	MRLILLLLLLTACTNDRPWKVIEVRKKGNACEYVLSRSNGFGPQVKIKTDKCGKYQLFQTINP
Ga0334982_0000227_31361_31600	F098895	N/A	MTLLGKCNFDVYKAILDIKESQPEIGEHLISILQQRQYLWQITLSEMLVFSAYLPWPIWDRKVHTFYLLFESQQTTTMP
Ga0334982_0000227_7678_8076	F006105	AGG	VIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNATTDFTLLKSANLSQYIERYDKFSLAVGSLETGSYKYEVYDTSSTVGAAVAVVETGLAYVQVVSLTFNTYGNSIQYTVFGASDIEIFDQTFDPSFA