Scaffold Ga0334982_0000149

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000149
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40617
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (87.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018127	Metagenome / Metatranscriptome	236	Y
F025644	Metagenome	200	Y
F031754	Metagenome / Metatranscriptome	181	Y
F051706	Metagenome	143	N
F074372	Metagenome	119	Y
F076850	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000149_13905_14588	F051706	AGG	VAQKDIGYYSPTLAKRIRDNSFAWERERAAKPIEIRQSTPDPIYFYNASTETIPAYGCIQKVGMETIDGQSVLKVDRPIDYTASVMGPFLLNGPAEVAANGLGTAQWGPIYRAKKDSATYSTGTRMGPVESSFDLSKGCLFSYIGDDEQGDDLIKVIACETPLLAVAGSGIGANTSGTVTAKQPASGNWTAGTVTYTAWNPTGVAIASAASVLLFPVDAKWLAVELC
Ga0334982_0000149_26201_26431	F025644	GGAGG	MRQWEPTTRGGYRVRNIEPINGDGYGYDLRGEVGNHSNEPPSEDPADWAQETWRSDGRYMVGKESVFDLIEVQDGE
Ga0334982_0000149_27616_27783	F076850	AGG	MNPYQPPDDESQLDRIERKLDRLNGEFALTLMTGAIVATACLFALEVLRVNGWKF
Ga0334982_0000149_31193_31345	F074372	AGG	MTDDEKTRKLQDKVYWLEMRVKLLQERNKGLRQWITKLTNKTHPARRAGK
Ga0334982_0000149_34180_34557	F018127	GGAG	MAKQKDNWIPWLIIGGLVLYVMNQQPKGGGDSSKPAGVTAVVRSTIPSIRAAYKQAFLDAAAKIETGEIKDQEQWTKFISDNAGGKNREALDRVYTAIDELKLPVTFAGREAEIARINREISRAW
Ga0334982_0000149_35771_36205	F031754	AGG	MNEKGGPVIMVVLLLGLFWFCSEPAKDPTQCDLMDTTPLIEEVATVKESFTVEPIDPQPSPSDKHEATKREILVFLAPKDQKCEPCDRWKRCEMQRFMDAKWEVAIFDEPHSYGRTPTFEIKSGDKKATLTGYTTLEQAAEAVR