Scaffold Ga0334982_0000146

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000146
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40868
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (81.16%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F039992	Metagenome / Metatranscriptome	162	N
F053126	Metagenome / Metatranscriptome	141	Y
F055684	Metagenome / Metatranscriptome	138	N
F081071	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000146_1647_1970	F001459	GGCGG	MRKLKAILSFIRNQEWVDEPKWEDEDEKAWTAFLATPTGRKLSLILLNLTLRQNASAIMKNNDRLAEACGWAKGYRGCVATLESLATQKLNSAVLGYGDGSDEPVAD
Ga0334982_0000146_19932_20264	F002009	AGG	VVKEVQPTGDETMTPPTIEELGKAAEDITWRVMGKGSEKSAYGEWFNVDKPVHDYHIGRAMRHLSTAMLQLQKSTPCPDNNGETAADHLERALVRALFAWAQIKKEVPRL
Ga0334982_0000146_30225_30614	F081071	AGAAG	VTAVEFIEASGVPESTWPTFREWFEWHKERDLVGVAKNGDEVAGVAIARCVKGVEAPDPYEHDEAGESVFVDLTVTSIDGKSNALSRKALKCLLSILWDRFGPRRRITFKRNGFYKEYDYYNFMRKALN
Ga0334982_0000146_32486_33184	F000635	AGGAG	MTLSEIAQYAGEKVGKTDSDTLVFLQKAASLAYRRVWNFAPWRETVTSSTYSVGTSRTITLGTNVETPLSVSYDQAEVEPIDLATIISQDADLLEDTRTGTPVLYHFTGRNTSGVAQLDLYPRLETAGTISLRVVEKLKCLTRTNIIVDFPPTTQALDDELRLPHVHQVVLSLTHADALERERQYAKAQSVVQTANADLAVMANYELSQVGGIKQITPSSLGDLTTEEITAS
Ga0334982_0000146_33171_33446	F055684	AGGAG	MWITSTNNIIRQPQGIRIGDVNHPASIFWCWSKEQLAQIGIKPYHPASVPAGERVTGAYTEEVDGEVYERFNTEPIPQPEPTPEEPVNDPV
Ga0334982_0000146_37650_37901	F039992	GGAGG	VSLDEIHDLRDKVQTVSERLARMEERQVTLIGMVERSLSSFGDLSNRVTSLEHLKTKMLLVAGSIGAIVSVAWDALRSRLNGG
Ga0334982_0000146_37891_38172	F003112	GGAGG	MWKTIAIWLTNLSLRFLMTQKEYACFKEALRFAGENNTVARETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES
Ga0334982_0000146_40006_40200	F010603	AGGAG	MAKEFVRSERKAKGKALRFDSQGFTNVFEITAASSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0334982_0000146_40202_40480	F004760	AGGA	MPIYQYEDTRNGSVVELEKPVAERDSVPRYLKRFSVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSRYTPDSIKRAAAQRS
Ga0334982_0000146_6350_7000	F053126	N/A	VRVENPPDKLPEKSKNGKLAFSPEIEQKILEACGNGFTIEKAGALVGVNPSTIRTWIQRKPSFGQKVETARKNYEMSLLKSVYDAGEKSWQARAWILERTCGYAAPSSRLSVDTSVTHGVNGSFAALLAGLASRRAEKKAQVIESQEVKQLDAPKSEYNSYCATDSPQPIATTMPKNPGKPRPLRMRRRKPRQESLKKWPVHDTPPATPPATDSHA