Scaffold Ga0334982_0000064

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0000064
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58337
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (38.10%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001190	Metagenome / Metatranscriptome	753	Y
F001806	Metagenome / Metatranscriptome	631	Y
F002985	Metagenome / Metatranscriptome	515	Y
F003601	Metagenome / Metatranscriptome	477	Y
F027818	Metagenome	193	Y
F031452	Metagenome / Metatranscriptome	182	Y
F043888	Metagenome	155	Y
F044462	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0000064_13348_13569	F031452	GGAGG	MSNFGDIVDGTFILSEEQVDIRKYGLSEIQASGIPTVYHVGDVINLPYASGEISTMEAIGLAWYAFASGITPS
Ga0334982_0000064_16933_17049	F044462	N/A	MILCPNFVKRLAATVSLVASVQTVFTPGLKAESNWVGE
Ga0334982_0000064_29879_30058	F001190	N/A	MTYTAPTGQSASDDYFDISKFEQLLDRLESSKGRQQRQKSTEGRRDIFAQGLATMMSNF
Ga0334982_0000064_30301_31194	F043888	AGGAG	MGGGGTTVQYQSPQIPKDDTFEKYLAYQQQKETAAEERVAKERAEAAAKETARKASGQAGFTGLRTGVEQQLRQGLISYSDATGQLRDYAAKYDLTPPETDIASLTKTYTEELLPGRRQTGISAAYEELLGRQATEEEKGKAMERFQQGYYSSVQDLRDSLSKGQEYQDKFNQSYLDNYYDTMFGKQGVDEAGKKTGKRTFTFDKSLLPTYAETTKDRAGVALPSFADQFQGSPAEIEEQLQNVRETRKYLYSAGLTNLQGEIDKETQKLKNEGSSAVAKIQAQGNIYQQLVGAFSF
Ga0334982_0000064_37121_37333	F001806	N/A	MEAGTRQKRVEALEKIKDKAMQMAQEGKDSFEVRNFVTSAKKELAYELPDEEAFQKAMSATLAYKAKKGE
Ga0334982_0000064_38345_38734	F027818	N/A	MFSNTIIGNIAYMETAVHEGREFLAITMYVKDQFDGVCRIKFNNGNGLLTAYNNGTLVVGQQLILVQYDVRIASIRTHYVKDDQLVALKYPEIALTRVRAVIGASPETKPAVTPVAESKVEPTLEEIPF
Ga0334982_0000064_42433_42630	F001120	N/A	MTERSAFNFDKTIAGVNITERGIKSFTKSIRLGPIQFTLNARPSGLLGSFSIPGTGLSKRNIKLF
Ga0334982_0000064_44963_45184	F003601	AGG	MEHDYTDDQLLAMAMANIGDFIHDNSPHYVLIEDDPRNEEDYDTWEYGTEPLPHDHTWQHASIDVSVSPSEPE
Ga0334982_0000064_49063_49296	F002985	N/A	VSYVIATWKNGVPHAITACNKSNQFLLIPLDSDVALNKIFSHPYRAGAQQILAWINKNNDKLSGQDLSIQDEARFRK