Scaffold Ga0334981_0028937

Overview

Basic Information

• Taxon OID: 3300033980
• Scaffold ID: Ga0334981_0028937
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2999
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048938	Metagenome / Metatranscriptome	147	Y
F054609	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334981_0028937_1629_1877	F054609	N/A	MNSLIQNAVARGWISFPHPAAVTAHPDVVKARLNSPDYNAQRAWKLWNEGQSLAYVAKAVGVKKRCVMAIIEEGKSKAKEVK
Ga0334981_0028937_1874_2224	F048938	AGGAGG	MNIEETKEAIRVMQAFVDGKDLEVLGPVGKWEPVHFPRWGWDDTKYRIKPIATIRPWTADEVPLGMQARNREYPKTRWLIDRTSSEENRKDWCEKYEHSIDCGKTWLPCGVMEESK