Scaffold Ga0334981_0014698

Overview

Basic Information

• Taxon OID: 3300033980
• Scaffold ID: Ga0334981_0014698
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4387
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014250	Metagenome / Metatranscriptome	264	Y
F053291	Metagenome / Metatranscriptome	141	N
F095454	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334981_0014698_1024_1299	F095454	GGTGG	MDYNKIADILAQINLDALELEEVEYLPSDFWIDLEDGLTFAVFVNGGWAEPTEMGKSQLEFAWRTLCDMRDLDPEVMYDTPLDFFKAQEVK
Ga0334981_0014698_3262_3534	F014250	GAGG	MMTTDLAPHLQKLVDLGESGTDILHGELKNLMLEAEKEYNAAVEQEEYTEEAMDSMERKYWEGQMDALSWVYALTYQLSFAISDRMKLTN
Ga0334981_0014698_4251_4385	F053291	N/A	QELLDYMYDDNLSHFDDRDTSDDCDCYIHITLNTMIKYMELIEC