Scaffold Ga0334981_0014435

Overview

Basic Information

• Taxon OID: 3300033980
• Scaffold ID: Ga0334981_0014435
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4430
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F012433	Metagenome / Metatranscriptome	280	N
F029043	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334981_0014435_1030_1290	F012433	AGCAG	VEVSADQVADLRERLARIEERQTNIITILERHTSELAQWTAKINGKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKARVFPR
Ga0334981_0014435_1348_1695	F006138	GAGG	MPATTVGQSGLVFGLTAETIGLVQSFSETRNIEKNEVRNASGDITGIGYYNPTTAYSLSVAITGASTSLTVGGAFSTLANASTVGTVRIDSLTINKSNSAFVTLDVSATGYPNVS
Ga0334981_0014435_866_1039	F029043	GGGGG	MSKDDQACQALQYLLDEGFIALGYIDGKPSVHLTTSLADAQKAILKLVSNDSADWWK