Scaffold Ga0334981_0012370

Overview

Basic Information

• Taxon OID: 3300033980
• Scaffold ID: Ga0334981_0012370
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4829
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006740	Metagenome	365	Y
F008303	Metagenome / Metatranscriptome	335	Y
F027821	Metagenome	193	Y
F053891	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334981_0012370_1434_1742	F027821	AGGAG	VKDNSTGKNKDFYDLGKQMFDRIQPLKPKANPIQADIDLLYQANSADVEALEDAKITLNVIKEVDPGVYDEIIDSSLALINKALGMSYSDAMERVALKAGGQ
Ga0334981_0012370_3702_3893	F008303	GAGG	MIDRLILSAVLSVTGYNGLFPEPPTPLTLKQKAKEKSISGMCDRKPKSKAAKDLCRRWRKHNA
Ga0334981_0012370_4061_4207	F053891	AGGA	MPRPKSELTKSGKSIGVRLTQSEYEQWVKLGASKWLRKLLQEKKDARV
Ga0334981_0012370_4194_4343	F006740	AGGAG	MPAFDTWSHDNLAKFAAEAYAKMQEQHDLIQQLQNDLKDAIKAYREMNK