NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334981_0003552

Scaffold Ga0334981_0003552


Overview

Basic Information
Taxon OID3300033980 Open in IMG/M
Scaffold IDGa0334981_0003552 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9706
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045790Metagenome / Metatranscriptome152N
F055822Metagenome / Metatranscriptome138Y
F060853Metagenome / Metatranscriptome132N
F091922Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334981_0003552_3329_3580F060853N/AVYNIILHSKGKQMAVQQLLDNLYLTPAPWRKWMQTREEIIEDWKAGKDFRIESGPYCSIRDIEHLRSSYNRVYIIHSRGSIEV
Ga0334981_0003552_3642_3875F045790AGGMADIHELREELLEEAMEYLDCKFRTQKKFAILYFEYKLKQGIPIDNYTTFMPTIYTPQEAIDLAKAMETYVVGGNSK
Ga0334981_0003552_6735_6938F055822AGGAGMAGYTREFLIDAYLWRFTKIPSIGIEQLLDLEQIANKTYDTYGKDKFRDYSSLDAEYLRNYKASLKR
Ga0334981_0003552_9106_9300F091922GGAGGMSKIVNYTAELEHLIVNTLLPAYEDYCRRYPFSPLAKEINYDIVREIKHTRDCGALLKPRKNLT

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