Scaffold Ga0334981_0003552

Overview

Basic Information

• Taxon OID: 3300033980
• Scaffold ID: Ga0334981_0003552
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9706
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045790	Metagenome / Metatranscriptome	152	N
F055822	Metagenome / Metatranscriptome	138	Y
F060853	Metagenome / Metatranscriptome	132	N
F091922	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334981_0003552_3329_3580	F060853	N/A	VYNIILHSKGKQMAVQQLLDNLYLTPAPWRKWMQTREEIIEDWKAGKDFRIESGPYCSIRDIEHLRSSYNRVYIIHSRGSIEV
Ga0334981_0003552_3642_3875	F045790	AGG	MADIHELREELLEEAMEYLDCKFRTQKKFAILYFEYKLKQGIPIDNYTTFMPTIYTPQEAIDLAKAMETYVVGGNSK
Ga0334981_0003552_6735_6938	F055822	AGGAG	MAGYTREFLIDAYLWRFTKIPSIGIEQLLDLEQIANKTYDTYGKDKFRDYSSLDAEYLRNYKASLKR
Ga0334981_0003552_9106_9300	F091922	GGAGG	MSKIVNYTAELEHLIVNTLLPAYEDYCRRYPFSPLAKEINYDIVREIKHTRDCGALLKPRKNLT