Basic Information | |
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Taxon OID | 3300033980 Open in IMG/M |
Scaffold ID | Ga0334981_0003552 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9706 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (61.54%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F045790 | Metagenome / Metatranscriptome | 152 | N |
F055822 | Metagenome / Metatranscriptome | 138 | Y |
F060853 | Metagenome / Metatranscriptome | 132 | N |
F091922 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334981_0003552_3329_3580 | F060853 | N/A | VYNIILHSKGKQMAVQQLLDNLYLTPAPWRKWMQTREEIIEDWKAGKDFRIESGPYCSIRDIEHLRSSYNRVYIIHSRGSIEV |
Ga0334981_0003552_3642_3875 | F045790 | AGG | MADIHELREELLEEAMEYLDCKFRTQKKFAILYFEYKLKQGIPIDNYTTFMPTIYTPQEAIDLAKAMETYVVGGNSK |
Ga0334981_0003552_6735_6938 | F055822 | AGGAG | MAGYTREFLIDAYLWRFTKIPSIGIEQLLDLEQIANKTYDTYGKDKFRDYSSLDAEYLRNYKASLKR |
Ga0334981_0003552_9106_9300 | F091922 | GGAGG | MSKIVNYTAELEHLIVNTLLPAYEDYCRRYPFSPLAKEINYDIVREIKHTRDCGALLKPRKNLT |
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