Scaffold Ga0334981_0002499

Overview

Basic Information

• Taxon OID: 3300033980
• Scaffold ID: Ga0334981_0002499
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11940
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (52.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F001881	Metagenome / Metatranscriptome	622	Y
F036207	Metagenome / Metatranscriptome	170	Y
F075870	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334981_0002499_11521_11709	F075870	GGA	MIKPIKEEFPHGDGFPIKITHKDGKELKDVKTCYFQTEDHAQKYIARNNFKKKDYTITYKNG
Ga0334981_0002499_11758_11931	F001881	N/A	MNAVWDCRNNQGADTEEKLVSAILQVAAETVRFYTAQDNLIVLDKNDMLQLAQELDE
Ga0334981_0002499_5384_5539	F036207	N/A	MINFISGTIFGIIVATIGFSPVAGALDGMMLNLQKTTVEMNAPKLPPPVSR
Ga0334981_0002499_8914_9336	F000345	GGAG	MMTEPNTEENPLISPEELQKPNTLGESLKEWWDSDACKEMQKANEEAKQRAVGKYFMLSESDKLDMVQAICYIMCKAESEGTSHRGLQDALGIYPTGFWVDHLMEVHNALWSYYHDQKQEKELKDDLDALDEFIENKREC