Scaffold Ga0334981_0000728

Overview

Basic Information

• Taxon OID: 3300033980
• Scaffold ID: Ga0334981_0000728
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25254
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (35.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012341	Metagenome / Metatranscriptome	281	Y
F014004	Metagenome / Metatranscriptome	266	Y
F015704	Metagenome / Metatranscriptome	252	Y
F050990	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334981_0000728_13000_13212	F015704	N/A	MILSVPKQPTLMTFSQILLNAADDNGQIRWSTACQAAKEHGLFDDFRTEYGVTSAFGGVDAGEFLVWLGY
Ga0334981_0000728_1939_2157	F012341	N/A	MTLEEFFEMVTNTIAEPHSQICEHDKRRAIRVFLYLDEFMIENVPEYCGDTELGEIDFGSYAAEQLDILEGK
Ga0334981_0000728_7364_7489	F050990	N/A	MPEIMTFTGDAVTYLGLIGVISTAIIVVSVFRSYFNSPLRK
Ga0334981_0000728_7486_7722	F014004	N/A	MTTLTLQVTEVSFDFDDLDFTPEEQQAVLDDVLGNVFEVEVDDGYDDEVVADALVEEVTDYAGWCVCSLDFVHVLNTH