Scaffold Ga0334978_0145305

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0145305
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1184
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011281	Metagenome / Metatranscriptome	292	Y
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y
F043281	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0145305_13_267	F043281	N/A	MPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYNDAMIIHYAGQSNDLTRLSNQIKEDEAKLVELGR
Ga0334978_0145305_306_584	F021063	N/A	VQQLAGEVALQAIRDLRMLRKRGMVKGMKIVKGHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYVLPT
Ga0334978_0145305_568_714	F022371	AGGA	MFCLLDLAGVVWVIGWFVLYSSLTLSALYCAGYLIFKLIEIIRKELDL
Ga0334978_0145305_711_914	F020665	AGGA	MRKRKADKYIDVVKTEECKSVKITVNVDDDLYEAMVDAGRQHIVKDKKACFEYALNKALLEMLEELK
Ga0334978_0145305_911_1183	F011281	GGAGG	MTEFKQKVLTASVDRYVLTKTQCMMLRQDAEVIGMKRAPVLSKDGVTRTVSRTRTCSSCWIPFAKHYEWIYNVMREITEGINAEQWRFDIQ