NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334978_0060153

Scaffold Ga0334978_0060153


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0060153 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1958
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084890Metagenome112N
F091132Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0060153_110_397F084890AGGAGMLYPLGLTGTLYPLGLHPGLILGLRLLKCIPCIHLDSLAPVLDLLAQHPSLELASTIPSLDLTTLAPALAVAAIIAGLNIGSIAPTLTLEDCDCD
Ga0334978_0060153_390_824F091132GGAGGVTDALNGKTVLVGAGLAGLTWAFTRPSADTATNYTNASISVRFFELDKKFKPISTTPALSLSIGSGITRSTNTASSQAGLFQVTAAQLGTLLGTAEAKNFAYVWYIQPVGYEAVRAFVGDGYDGRFLLAKEGYAGSQDGEIKVS
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