Scaffold Ga0334978_0025411

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0025411
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3122
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F002433	Metagenome / Metatranscriptome	559	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0025411_1745_2224	F000903	GGAG	MIDRIEEVQCMIAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAELVVAKRLGYDYEPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVVGNTPKMHIVGWMPVAVAKKPRYKNTSQNNWTVPQVNLQPIETLIRSNYAHPSI
Ga0334978_0025411_412_609	F002433	N/A	MSVGEWMAVGGFVIVLLTAIFSSMRFMVKSIMRELSPNGGNSLKDQVSRIEARLDQLLLEIALKK
Ga0334978_0025411_869_1471	F001897	AGGCGG	MAFMDSYEGNKERTDRWIATYPQGRLETHIIEFNSEKGYVLVQAKAWRNQTEIDPAAIDYAHGFLAAYSDKMRRWMVEDTCTSALMRVMALVMGGTEKATKEVMASVKTETPAADHDYWTTKFGDVPSYKTREEAEAADETGWAVNGVPMCAHGSMRWNQSKPDAPKAWAGYFCSEKIKEKQCKPQWHVLTSDGTFKPQV