NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334978_0010893

Scaffold Ga0334978_0010893


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0010893 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4833
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F059762Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0010893_4105_4461F059762AGGAMSEVRIRRKSKTFAFTLSTATSVANTLPMLDMAGGHIEVGTMLTAATQINIWASDTTSGPFFQLYDKDGAVVKVTLAASTTEGRAYALPDEVFATQFIKLLSATTNSTGTIGTAVFKG
Ga0334978_0010893_70_369F002540GGAGGMQNYGATPSELQQYGNLNLWQSLMLLQKWSPLLKYGQAFMNEADPYKRSIVVADAVEWLASQTKATVDDELVKRLADVLKTPQGEALVRWIVVQAEALR
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