Scaffold Ga0334978_0009670

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0009670
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5138
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0009670_2652_2912	F001964	GGAG	MSQKSYAPTRYKVQINGAIGWSDLKQRTVIYETVIFATRKEAEQAAKDLNPGEYTQGRIRVVPKDLPEDYDIYPVGERDEEKPNIK
Ga0334978_0009670_2909_3139	F002227	AGG	MKLTIQSKQNAQTIIDLFNAIINGEVQEHGAQPLSIYDDDKHICSIVAANGQQILELVIEREEGDMIVQQGEPETL