NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334978_0008995

Scaffold Ga0334978_0008995


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0008995 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5344
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048952Metagenome / Metatranscriptome147N
F057319Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0008995_2966_3631F057319N/AMDLKQHQAKIEEISKGNYVQHSLLDNNGNKLISANPYNKPSKLPDIIRSLKGMPEGQYIIRCSKGKNSQFDYPINTATPGTNAPATNVSLSQAATDDLKTAERLGRLEAENAYLRQQLAEAGERIQALEAEALEEDWNDEADDILGDPAPSPKEQILEAIAPIIPALADKALALVDRFLNKPAAQPLSERAPAPAPVIDYERLAEMVSQKLMEAQEPEEIS
Ga0334978_0008995_4335_4859F048952N/AMTAPNKSDIGTLAAIGGVILFWPAIKSLINLTSATAQATANVLTPTDQLLAQAAPGIYAQLMKRPPLPLPSGGMPSLSRFLSDQECAALANLIQENLGGTSSDWPTIREAFRGLTLSVSDQRMIYAQFGLRREWWAVAGGSKKNLFQWFRDNLTPQELTVARQIWRSANIVPAL
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