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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033979 Open in IMG/M |
| Scaffold ID | Ga0334978_0005941 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6634 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (95.65%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011484 | Metagenome | 290 | Y |
| F041644 | Metagenome | 159 | Y |
| F042880 | Metagenome | 157 | Y |
| F052570 | Metagenome / Metatranscriptome | 142 | N |
| F064681 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334978_0005941_1776_2051 | F064681 | GAG | VKHNLTECDNTSTAYFDKCDECGELSACICLASIVDEWEIDKVGKEGESFAYRYQFKEKASDLVARFGYASTYREAMDNIAHSVKCKEAGK |
| Ga0334978_0005941_2048_2224 | F011484 | AGGAGG | MRELEQFLDVEAEWIFEKINECCAGDTNRTYYQGRLDQLAQVRRYLGQPQIMRERAGK |
| Ga0334978_0005941_2528_2683 | F041644 | AGGAGG | MSLDFILDRLTSVQVGGFWALIQVIIYALVIYLGLVIISKITDKREREGKK |
| Ga0334978_0005941_2814_3035 | F042880 | AGGAG | MASYTTIGELIEHLKGEDLNAPIIYQYYLAEHFDISEEVFGQVAGDFDSLIPCSDSYEVISREIDSKREEANV |
| Ga0334978_0005941_3037_3441 | F052570 | GGAGG | MKYKLPKGVELEILDYDAERKDRQDSAFYTWGDTNDVALLTYQGREYRVVCVGEMRILYKGEIIRYCDDLVRAGIKRDKDLSKIDDSGGEWINNSWFEVYDYGSGEYTGEVYHEVKDAIETVANWIVDEELVNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |