NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334978_0004131

Scaffold Ga0334978_0004131


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0004131 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8050
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007467Metagenome / Metatranscriptome350Y
F065527Metagenome / Metatranscriptome127N
F088506Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0004131_1762_1941F007467N/AVNEKEAWARFEEGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNDDISRANKTWRN
Ga0334978_0004131_2360_2722F065527GAGMKAIITMTLTAMLMASVMAEDDEEVSIGDFAGGVLGKSAIITGRNTAVTSDGKFICSNGRGFATSGGYYGANGKQVFGNGKLVVKSGSFFYGSSSSWKNGNSYFDGEKGSWITSKPKIVD
Ga0334978_0004131_7224_7862F088506GGAGMAMFNFNLDGQKEVAKPMRSYIDFDADGRPTARIYVDEYDAAKSNPDFQPLIAGAGRNMQTAQDAFADEMTEAKLENVEKRIKAKRQETIRAETEAREAQAEGNVYTGPDFFGSIGGLRKTFTEKATSRQEELRKLLEERSGYMGTPEISAPMESATPVAQAPSTQNEYINLRSPDGSVQRIKKSAWSGQSKTKPGKKVSEVYLDSGYSIVP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.