Scaffold Ga0334978_0001374

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0001374
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14368
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000903	Metagenome / Metatranscriptome	843	Y
F001731	Metagenome	644	Y
F001897	Metagenome / Metatranscriptome	620	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0001374_11946_12578	F001897	GGA	MMASFMDGYEGNKERTDRWIATFPQGRLESHIIEFNAEKGYVLVQAKAFRNQTEIDPAGIDYAYGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGNTEKATKEVMELVKSETPAADYDYWKTKHGDVPSYQTAAEAEQAGTPSFGSSADSAWTADAVPSCSHGSMRWNQSKPDAPKSWGGYFCGEKIKEKQCTPRWYVLRSTGTWEPQV
Ga0334978_0001374_12840_13319	F000903	N/A	MIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMAAELVVAKRLGYEYTPGITWDKSKADVGEHIEVKWSANPASNLWIQESDRHDRDIAVLVTGNAPKMHIVGWMPVAIAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPAI
Ga0334978_0001374_8152_9399	F001731	N/A	MTIFNPVWRVTIGGVQYTTAILANLTIRSGRTNIYEQAQAGYTNLEIINLDQSNVAIEINDSITIELQDSTATFVPIFGGSVVEVGIAVAEVGSVDYAQRINIIALGALARLPKALTEGVLNDDFDGDQIYTILKEVLFNSWQEVPGALTWATYDPTTQWEDAENSGLGEIDRPGNYELENRGSSVTDVYSLVSALATSGLGYIYENAQGQISYADSTHRTNYLAANGYVDLTANHALASGLSIQSRAGDVRNTIDLKYGNNSALEVSAVDPASVGLYGQLAQIFTTTIKHAADAQDQADFYLELRAYPRFNLNNITFELTNPEIDDSDRDDLIKVFMGMPVNLANLPLNMNSGDYLGFVEGWTFSARYNQISISLILSPIAFSLQAMRWNDVPVTEIWSTINPTLDWINATIVA