Scaffold Ga0334978_0001003

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0001003
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17350
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (13.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013294	Metagenome / Metatranscriptome	272	N
F035679	Metagenome	171	Y
F061680	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0001003_16204_16827	F013294	N/A	MMAHSLGNAFVHRLGERCGTKILWYGMKKLLDRYINNHYHEVRAYTLYFLTKLGSKIEADTVINNSYLHVLTINEDADTEDQVKSYLLNTIKYQILWNTSLSHRDDRVTSMEYEPSDEADDEQDLQAKILEDKIYSTHKGMIEIYRSQISDNVHRIVFEAYIDKGYTTARGMAKYFGIPVTSAHYLITEIKQNLRNLQYRYETFSNN
Ga0334978_0001003_5118_5582	F035679	N/A	MRLSIIILSLVSTIFATSCSAPKRAQWHYKKALKNGLQVVQDSDTIRITTVDSIPVIQNDTIVWEKFYTTKDTVIQFNNVYVPKTRWQTRIEYRYKTRVERIRGKTIYKTAQAKEVVKYKILWWPVIVAFIFGILLRFLIQKGLLDRIALLFKL
Ga0334978_0001003_6757_7047	F061680	N/A	MQVTIGIEVAYFDFDDVHGNCEFKITNITDESYEVEITNVSATQVIGEVELDYILTDTEIDQLNEEIIWCIQDTDMIRDMQDPMNYFDEDEWRYDA