NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334978_0000766

Scaffold Ga0334978_0000766


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0000766 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19836
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (32.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F001272Metagenome / Metatranscriptome733Y
F005388Metagenome / Metatranscriptome402N
F082111Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0000766_11828_11992F001272N/AMITIQLTTEQVNNLLQLIDISIKAGGFQNAKVGVPLADLILEAAKSSQQIEIAK
Ga0334978_0000766_15539_16786F005388N/AMSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQALNQATSELTQEMLDVAAATLIRNGATNPDSSGFISFSSDGPVFPLYIGMEASQRIAQNNAALREDLRFADMGSGPGAELLKRIGANRVIKNFRHIPNLFPPRFSYAGGKYTLIQPFTSSSGTKGTVFSVNPSWTTALYEGAFIPTPYVIKSHIVRPVNRVGDLSWQPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHAVEPVFTNQGMTIIFRRCTGALSQIICS
Ga0334978_0000766_17685_18128F000922N/AMTKAQWERAKAQYLSGREWQAIADDLSVPINTLRSRACREGVTKVKAQMQTICTEKKTQTLESLSALVRSKLAADAASTLERIDSYNLDGIKDESTREQILGSVAKRSALVFGWSETGEQASVSINLLGQMPDRTPVEVVVSEPPDK
Ga0334978_0000766_9784_10953F082111N/AMDEPLNSPLTNPASQPDFGNSILDAFNRMGAEADEGVSTPVTEEPKPAKKAATPAAETTKPASKSEKDIERLFGSSKKQAAEAPTSTDADSDIPETIKSTKAADAFRKIKEEKAQLAKQLDELKAGKSTNPQFESQLKTLQEERDALSERVRLLDIERHPEFVKKYEGKINSVFESVKGLVGTDGERLVGLLKSPESDYRNSQIDDIVEGLSPSKKAKLGALIVRYDEINSEKAAEMSEAKSDYDAIISKYQQDNEQGTKAALESASKTWAKVSENARALEIFEPREGDEEWNGELNQRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYSQVEVNKRLQAELAKYRGSEPGVSSKATNPGFKSANVNNAKSEDFVASVLKSLGR

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