Scaffold Ga0334978_0000517

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0000517
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23480
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (40.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058094	Metagenome / Metatranscriptome	135	Y
F082584	Metagenome / Metatranscriptome	113	Y
F087098	Metagenome	110	N
F105025	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0000517_14299_14586	F087098	N/A	MSNPTVQIAARSSSGIVQPVQATPDGALRVTTGFPVPLYDKFEVFKVGATNNTNYTEYSFAGTAVARIRMTYFGGVPTTDNAQLQTSFVQYPPFA
Ga0334978_0000517_14589_14861	F058094	N/A	MSQVSFDPLTGTMISTTAQVAQLDSSGQVSGSMIPDEFDDVQTFPAVADFPAPGLVGRIYFPADTNLPHRWDPETLSYIPIVADSDGGEF
Ga0334978_0000517_15833_16201	F082584	N/A	MATVIKLLRSTVPGRVPTAAQVAQGSLALNLADRRLFSKDHNNEVFRIARPRDPSDYQLLHAADGNHLYLGRLAWDDYPATGPAEDSTAWTIYRITTNSAGDVVSEQSATGAWANKGNLNYD
Ga0334978_0000517_18762_18944	F105025	GAG	MDTQQATASFTGLLATATGLTVSMLPELEAWLRVASLVIGCLVGLASLYAILRNRKHPHE