Scaffold Ga0334978_0000289

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0000289
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32382
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F003267	Metagenome / Metatranscriptome	496	N
F003459	Metagenome	485	N
F006105	Metagenome / Metatranscriptome	381	Y
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y
F012449	Metagenome / Metatranscriptome	280	Y
F017993	Metagenome / Metatranscriptome	237	N
F024098	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0000289_12602_13051	F003459	N/A	MNHIVTIPKWDISKYEIAHIADGLIARINEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYQHDQVWSDLQAAMKAREELLKMAFRNAGKATVYDESTGEAVPVCPAKGTKPSIAVTFKAS
Ga0334978_0000289_19711_20262	F001345	N/A	MASAEQTILDLYRTGEIRKACLTITGGDPLWRDLEQECVLILLEKDPAKILQIQSQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELDPDSPIPQAEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQSHGHADISPAD
Ga0334978_0000289_20231_20482	F012449	AGG	MDTLIFPLLISSLTALAIAEYHVLPQAWYKTWLARHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQVTNR
Ga0334978_0000289_22585_23244	F003267	N/A	MKLVHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPDQRKVVKEILDNSLVAAKIKVVVTRTNAWEQATLTEMYKASQIEDAAYLYAHTKGSSDPSLINQLWCRSMVFFNVVAWERAIAELANVDCVGAYWLTKEEFPQIADHNNPNGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPGPDKFVITF
Ga0334978_0000289_26063_27292	F024098	N/A	MSISVLSGSPQTATPVYNKMIFKVSGSLTSATNYRYVCDVKNGAGTTTLARLKCDKLPTTNYGFFDVSRVVETLMAPTVPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVSGVLAFAGNLEQLELADWSGGTYFPPSPLTANTGKSLTTTQDGTSVSNAIAVVYAESYAYLCYGKGSANTTNAVRVRYRDASNALTREFFVQEGAASGSSIVRFGSGPMNLNALTSAQCSDGLAGSASFPILEGAGYSIEPIDTLNTGLPYYAVYYRLGPCERFNSIPIHFINKYGGIDSYTFTMKNRKRANVEREVYGYNSDVYATTTYNKMWAGSFDYVYALNSDWLTDAESEWLIEMVRSGQVWLELDGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0334978_0000289_2878_3276	F006105	AGG	VIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVTTDFTLLKSANLSSYTNRYDKFQITLGAVETGSYRYEVYDTSSTVAAAVAVVETGLAYVQVISLTFNTFANTIQYNVYGASAVSIFDSTFDQTFQ
Ga0334978_0000289_31882_32382	F017993	N/A	MNLKSAIDTLRTELRKFTTQKQSFADYKLVDGTIVRVDGDLVAGTAVYVITEDETLPAPDGEHQVEGVGTIKTEGGKITEVVVAEAPAPAEEVAVAAEITPEVAGEVVSEIAEGYPMVDPLMVEEIVKKHLVSIMEELKAAYTEMGKMKDKMAAFASQMETMTDIVE
Ga0334978_0000289_8853_9116	F009057	N/A	MATFRKFAFPSQKVADQLLQSLQPLDTAVPLGELDGLVCYDILFQDAYPDSFAAYIVWPTPCGVHSFLGWDAQYAADYKEFATPQSK
Ga0334978_0000289_9349_9624	F007748	N/A	VNLIETTIIGSISAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELVVLRQRIESLEHTIHALESENATLKAMQ