Scaffold Ga0334978_0000246

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0000246
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35331
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (62.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029722	Metagenome / Metatranscriptome	187	Y
F033407	Metagenome / Metatranscriptome	177	N
F034912	Metagenome / Metatranscriptome	173	N
F097190	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0000246_14813_15079	F034912	N/A	MKSLPQIVKVVWEDACHDTLGWGDSPEKAREFQVPLVVSVGFLLAETKQGVKICQSLTDDAIAQSLVIPRKMIQSIERGAWREKKVRR
Ga0334978_0000246_17472_17717	F029722	AGGAG	VESWINLIKQVKSSDVEEIAAAYESALPFVVQDWAKMILKLAKSKRLPIIEKIEKVHGDKIGQMVRDEVTAQHRGFSRVRK
Ga0334978_0000246_19548_19901	F033407	N/A	MNLNTFEEGLLDSIQTERCKKLLWSVIQLAVDDACKAPYKTRPQDDTITAMRFLFGDLYESGLDNYLMWLDVDSKEFKRRMVNAMFSERHDKFTDFERRAFRANYNWYLRNEINTDN
Ga0334978_0000246_23152_23475	F097190	GAGG	MTDEQKKILTYLKKRKTPADLKSVRLQTKIDKQTTVNSLNALLKKGCIKTSFRIDPFTKERVWEWVKDEYEVKKVSRPKKKFKPVLSKQEEGVDISFFNNPFNLRVA