Scaffold Ga0334978_0000226

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0000226
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36495
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (73.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029722	Metagenome / Metatranscriptome	187	Y
F034912	Metagenome / Metatranscriptome	173	N
F082573	Metagenome	113	N
F088819	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0000226_24204_24518	F082573	AGG	MNGAEIQRMAHNLGLVHHTDQVKWLVRQILRKHKPLTKTEKMYLNYLTQPYSLNDLSAHFGCTTEGARKHLKVLMSKGLIERESRYRWTEGRHGAWAWYYRRKV
Ga0334978_0000226_31331_31606	F029722	AGGAG	MASWINLIKQVKSSDVEEIAAAYESALPFVVQDWAKMILKLAKSKRLPIIEKIDKVHGDKIGQMVRDEVTAQHRDSSRKTSSQQSQASRLK
Ga0334978_0000226_33323_33619	F034912	N/A	MKHNLPIVKVVWEDACHDTLGWGDSPEKAREFQVPLVVSVGFLLAETKQGVKICQSLTDDAIAQSLVIPRKMIQSIERGAWRCVKNPKMKSSSKSGKS
Ga0334978_0000226_8649_9035	F088819	GGTGG	MNVQYIKQDELRNVWQYIKPGLEVILKKSPESWIPEDIYSDCFTGRSLLWVFVEDNSVVGFVVLQPIGDNLHVWCAYGKGDSRAGLDHVLGIARAGGAKTISFDSWRKGWDRKAKALGFRPRKWVREV