NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334978_0000014

Scaffold Ga0334978_0000014


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0000014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91420
Total Scaffold Genes144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (46.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F014121Metagenome / Metatranscriptome265Y
F031454Metagenome / Metatranscriptome182Y
F073464Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0000014_15791_16156F000345GGALDKQTNEFGKALQDWWDSDACKQMQKANEEAKHRAVGKYFMLSEEDKLDMVQAICYIMCKAESEGTSHRGLLNELGIYPSGFWVDHLMEVHNALWSYYHDKKQEQDLKDDLDALDNFMKK
Ga0334978_0000014_22209_22418F014121GGAGMMTNTAYQIWETFKAELIVEPTDDMKEALASSIRVISSLIHRDGVLSNEPWLTHTAQELNEIADDVEAL
Ga0334978_0000014_29384_29533F031454N/AMKDKFMTDSTLDLFCDHADTQMAEEYAMELEAKAAELEITVDYYIAEFL
Ga0334978_0000014_34057_34209F073464N/AMLETKTWVVKLEIMIDANSHPRKFIPETISEALNFEMGEDLTHYEFICLD

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