Scaffold Ga0334978_0000014

Overview

Basic Information

• Taxon OID: 3300033979
• Scaffold ID: Ga0334978_0000014
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91420
• Total Scaffold Genes: 144
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (46.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F014121	Metagenome / Metatranscriptome	265	Y
F031454	Metagenome / Metatranscriptome	182	Y
F073464	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334978_0000014_15791_16156	F000345	GGA	LDKQTNEFGKALQDWWDSDACKQMQKANEEAKHRAVGKYFMLSEEDKLDMVQAICYIMCKAESEGTSHRGLLNELGIYPSGFWVDHLMEVHNALWSYYHDKKQEQDLKDDLDALDNFMKK
Ga0334978_0000014_22209_22418	F014121	GGAG	MMTNTAYQIWETFKAELIVEPTDDMKEALASSIRVISSLIHRDGVLSNEPWLTHTAQELNEIADDVEAL
Ga0334978_0000014_29384_29533	F031454	N/A	MKDKFMTDSTLDLFCDHADTQMAEEYAMELEAKAAELEITVDYYIAEFL
Ga0334978_0000014_34057_34209	F073464	N/A	MLETKTWVVKLEIMIDANSHPRKFIPETISEALNFEMGEDLTHYEFICLD