Scaffold Ga0334977_0127044

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0127044
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1340
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F023347	Metagenome / Metatranscriptome	210	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0127044_1174_1338	F023347	N/A	AEQDLASAIEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIGARNEA
Ga0334977_0127044_315_500	F034924	N/A	VFGTKYTNYYTIVSAADEYQAAEIANLRPETDWNEITTGDIIEATDVFLDEDTEIDLQLN
Ga0334977_0127044_728_898	F000441	N/A	MMRRKKMKMSDEYINDQLNKAQKLLWGGSETENIEAHNIISKLIRDRMEGDEGQND