NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0060282

Scaffold Ga0334977_0060282


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0060282 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2091
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F092053Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0060282_1067_1210F000441AGGAGGMQQTDQYINERLQAAQQLLWSGSLHEQDEAHNIIAKLIKDRMSDKGE
Ga0334977_0060282_1314_1457F000852AGGAMTTKREYLKTKGITVGARGRFSGAAKVALQEAEKNGIQFTAEAPVKK
Ga0334977_0060282_211_489F000263AGGMTPEDIGLPPHLQRLVNYDVNGLDIMHGELKNLMLIAEQDLANALEQEELSEEAMDSMVRTECEGRLDTLTELYNLTYQLSFAIAERQGQKV
Ga0334977_0060282_486_713F001019AGGMTYEPSLEILEVEYSCSPGGVDMFEVYDKSDIPLDIPIYETESLTKAVQFCYNLGKDFTVRTLAEWNERELSYVN
Ga0334977_0060282_53_214F092053AGGMKLSSEVKEDLQDQADQIIYFEAAMSNEDKASKAVYNRLVEIYKVAFKEGAKK
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