Scaffold Ga0334977_0048236

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0048236
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2378
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015354	Metagenome / Metatranscriptome	255	Y
F023295	Metagenome / Metatranscriptome	210	Y
F035672	Metagenome / Metatranscriptome	171	Y
F067530	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0048236_1550_1750	F067530	N/A	MNQILTLNLDPATANALITALEVSRRHGDFPVARTAVTIISELIRQDEEFKAKQSKPAPVPAQTAE
Ga0334977_0048236_270_527	F023295	N/A	VKHLRQAYNRAKLLLISKRSLVLLSMLQSMGCGARVILVPDGQPVMLAEPVKAKVYAFDTAGNLIPSSNRVLLPAGWYALPRKTK
Ga0334977_0048236_570_764	F015354	GGA	MNTTVSSLIRHGLTAAGGFLVAKGLASADQVGEIAGAAVTLIGVIMSILKNKKTAAAAPTPPAA
Ga0334977_0048236_761_952	F035672	N/A	MHTHLHDTIRDLGIGVGGPAGGLLLANAIPDPVIANISVTLGSLAALTVIIKNVLDIWNNRNK