Basic Information | |
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Taxon OID | 3300033978 Open in IMG/M |
Scaffold ID | Ga0334977_0041458 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2586 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000785 | Metagenome / Metatranscriptome | 891 | Y |
F010683 | Metagenome | 300 | Y |
F011393 | Metagenome / Metatranscriptome | 291 | Y |
F018718 | Metagenome / Metatranscriptome | 233 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334977_0041458_1519_1746 | F018718 | N/A | MTIREFYLANYPSDDMGDGINPTATFAGLLNQLIIGGDVYAYLYVYDSIIRERLFERLAEELNVKYDYVYNLWLK |
Ga0334977_0041458_2326_2586 | F010683 | N/A | MNKKVTKKSVKPAKKVASKKAVAMNVIKHKRVVLESVGTESLPDMVFISAAPAWAKAIVGKRYVSLDRAKAIIEALDAEKLINKGAK |
Ga0334977_0041458_259_609 | F000785 | N/A | MRVTNKRGMKFDCTKLMNWAQDLLGPSKCTAIAFTWDVEEESCGWYNWDDTIWINLASCKRMITVQKTILHEWTHAQQTFRWYNHYNVKYGYKNNPYELEARENEKLVKRAYKKKK |
Ga0334977_0041458_569_919 | F011393 | AGAAG | MRSSLRGLIKRKNNMGEQVAYNKCEHCNVELHTNEAGEYYPVVQRLDKHTNIRGEYHPIGNRFQYPRNWGKKRGATILLETRIADKIKVLADAQLELSKLQACLDKVNEWDETVLN |
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