Scaffold Ga0334977_0041458

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0041458
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2586
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F010683	Metagenome	300	Y
F011393	Metagenome / Metatranscriptome	291	Y
F018718	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0041458_1519_1746	F018718	N/A	MTIREFYLANYPSDDMGDGINPTATFAGLLNQLIIGGDVYAYLYVYDSIIRERLFERLAEELNVKYDYVYNLWLK
Ga0334977_0041458_2326_2586	F010683	N/A	MNKKVTKKSVKPAKKVASKKAVAMNVIKHKRVVLESVGTESLPDMVFISAAPAWAKAIVGKRYVSLDRAKAIIEALDAEKLINKGAK
Ga0334977_0041458_259_609	F000785	N/A	MRVTNKRGMKFDCTKLMNWAQDLLGPSKCTAIAFTWDVEEESCGWYNWDDTIWINLASCKRMITVQKTILHEWTHAQQTFRWYNHYNVKYGYKNNPYELEARENEKLVKRAYKKKK
Ga0334977_0041458_569_919	F011393	AGAAG	MRSSLRGLIKRKNNMGEQVAYNKCEHCNVELHTNEAGEYYPVVQRLDKHTNIRGEYHPIGNRFQYPRNWGKKRGATILLETRIADKIKVLADAQLELSKLQACLDKVNEWDETVLN