Scaffold Ga0334977_0041106

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0041106
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2598
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F011474	Metagenome / Metatranscriptome	290	N
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0041106_2040_2306	F011474	GGA	MKEKIDHLTHFDIVVKEELASCGSADEMLDVLAKNYDLRKPLGGLTKAAFTIGLRTAVGMLRPEVKADANYKSKELKDTRFPHLKIFS
Ga0334977_0041106_559_1371	F051646	N/A	MSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVPPNSYAVIFGYDFSPAGGGFKSLISMLQFPNVYLNSASIRFFETQQISFYTGTDFFPFIHHIDVKSVLAPRQWDESNPASVLVSDYRVMEEIDSTPIARQVYITSTNDVTITHGLIQTATPATTGAIPVTSRTPGFLTYGGSAQLIQAQTNYGPGGTPQQFMQPSPKDFQDFGLGLLPGNPTDQAFATPDATNGLLEANVHLLSLAADFPRNAATNYYLCLHYAIYSKTIPEQRG
Ga0334977_0041106_83_487	F000710	N/A	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPATIINATQLRVTLTINNDVVIDDVVAHELGASVATGVTTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI