NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0035646

Scaffold Ga0334977_0035646


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0035646 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2806
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014726Metagenome / Metatranscriptome260Y
F079651Metagenome / Metatranscriptome115N
F088525Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0035646_1085_1810F014726N/AMGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPSAGTTELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIAVNDVDGFTRANQATLDTRAIASDYLGGFVQAGVLNFSVGARPFATIVKPFQYAPPPGSPLDLANTYVNQISAAPVPAAGAAQVVGVPWVTQTKMRSNVYFTDPNILIEAEQQFNVKLSFPSGAVPVLATNVVNDSTNPLKVGVILDGLLLRPV
Ga0334977_0035646_506_1057F079651N/AVSLKRGKSVTIMANPRRRSRRSGGMRFGGNILSQVKGVFSKENLTVAGGGVAATVLTNFILSRTKADGSSLLPMPATNVAAAKIAYAVGIPVVGAILTRKFNPSLARGMVFGGLINGIVEAIKGYAPAETKKALGFSEYLEYTPMSAVGATPGYSAINQFSTVRPMNSAFSNSSAFPADAWGR
Ga0334977_0035646_56_271F088525N/AMTLPIRQSELNKAGFTGYFPALSWNQRKQVAALTLNAVGRTQDAFLLEINNVNAVRGITYVADVPPLRAGR
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