Scaffold Ga0334977

Basic Information
Taxon OID	3300033978 Open in IMG/M
Scaffold ID	Ga0334977_0026661 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033978 Open in IMG/M

Scaffold ID

Ga0334977_0026661 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3281
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3281

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001125	Metagenome / Metatranscriptome	769	Y
F007470	Metagenome / Metatranscriptome	350	Y
F034472	Metagenome / Metatranscriptome	174	N
F047650	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0026661_1254_1943	F000980	N/A	VFVSGTRYNTRMTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTACTLLSVEDATIPYTDSPLPTKEEQMETTTTTTIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQAQKTVGVLNGKIDAVKEIICEAYADSGDQDTLREIAEALGIELIKEVEFTASIEVSGTYSYNILENDYELDLESEITDAIFAESNNGNIEIGDQEVCNVREA
Ga0334977_0026661_1943_2155	F000311	GAGG	MYFELTAPDRLSLEMAYWDAQITGLDPEFMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSDRETTGYKEK
Ga0334977_0026661_2155_2310	F007470	AGGAG	MDYQDGFEDGVKFAREVIINNIRLWAETNDDGQVMDDIADRIEFGTVDYEL
Ga0334977_0026661_2300_2509	F047650	GGA	MNSEDLDLVYYCDACSIARASYLIKLLDGELAMCGHHYNKHREALDEKAYEVIELNKTEEAIPQLEKAE
Ga0334977_0026661_2511_2876	F001125	AGGCGG	MGDRANFGFQDRKGDTVFLYGHWAGYQMLQRLANAVSKAEPRWTDESYATRICISQLINEDWTGETGWGITINELSDNEHRVPVINWSKQTFTLMEEDLKTEVFSLPLSAFVTKYSQLVM
Ga0334977_0026661_3165_3281	F034472	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334977_0026661

Overview

Ecosystem & Geography

Associated Families

Sequences