Scaffold Ga0334977_0012492

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0012492
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4840
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F007363	Metagenome / Metatranscriptome	352	Y
F049499	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0012492_237_470	F049499	GAGG	MSDTMIRMEEDFRLVDILNADQLEVGDLIGLNDEVVRVIEIAPAKFGYVVTYENEFGEKEISDITDDERFELFIENF
Ga0334977_0012492_2932_3144	F007363	AGG	MKTYSIEDLLVDTYYAPRSLRRRFNGGIINHAEKREDIYLSEGYEAFAIRYRPTGRFNDEWATVAVKVAD
Ga0334977_0012492_471_680	F000808	GGAGG	MEYTYSLTTSYDGSLVNTLRVSDMLEAVNVWDKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVSIR