NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0012434

Scaffold Ga0334977_0012434


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0012434 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4850
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F002038Metagenome / Metatranscriptome600Y
F003714Metagenome / Metatranscriptome472Y
F006659Metagenome / Metatranscriptome367Y
F014261Metagenome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0012434_1136_1360F006659GGAGMRKDSKPSPTDYRVIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATLKAGEVTKAEPTK
Ga0334977_0012434_191_436F002038N/AMADTPKGIERIAATVPGQYALLLLLDGYPYVEMTARKHADFLSDLNAWKRKTYPSLSRSVVRFFTLAPNGEIKELTFTPVR
Ga0334977_0012434_2941_3228F000957GGAGGMSSFKHLDGMVALLSEIYEINERIMTGDICSSKTAIQSDRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGITYSYELADGFEVAGSQVPRRV
Ga0334977_0012434_3710_3976F003714N/AMPNAHHPYTETLTFAGRVIPLKRPMAEFAARRLQAILPQIAALNAAGKSQADAAAALGTTVCTLRTWLDLTGTTWVNLNRRGPYKTRK
Ga0334977_0012434_4310_4447F014261N/AMKTLITLTFVIIFGWLAVVTFYGPELYRAINGPEPVKAKAVRSHR
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