Scaffold Ga0334977_0009926

Overview

Basic Information

• Taxon OID: 3300033978
• Scaffold ID: Ga0334977_0009926
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5434
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050892	Metagenome / Metatranscriptome	144	Y
F100355	Metagenome / Metatranscriptome	102	Y
F102508	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0009926_518_859	F100355	AGGCGG	MTKPTPRPRPGPGTRVSCAIYDAAGNSSTVYTHLSAAAYEAVKQLQQETDEPLAGAFRSLIFKGAASLGFSDSVSAIDALAAANGGASDARAVHHLVRLGAGLEPILINPPTP
Ga0334977_0009926_76_375	F050892	N/A	MFWRRAQTALTHPSTNESMITDPRHRELLQRAIDAQILVADELQSAYNARIAMPIGHPQRLETRDLWRDNRALEALISGAHDLLAGKGGAVTLQGRSQP
Ga0334977_0009926_856_1194	F102508	N/A	MNRPSDRVSLAEFLDVKRLDATMYHLGGLRASWKAMPKAQRIDALRVAALSLGNIADRQFLAGERRPLGQPTHYMLMGVIALIASALAYTVGVEQGRARCTLGSVVAPSVER