Scaffold Ga0334977

Basic Information
Taxon OID	3300033978 Open in IMG/M
Scaffold ID	Ga0334977_0007544 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033978 Open in IMG/M

Scaffold ID

Ga0334977_0007544 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6230
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (80.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6230

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (80.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F012108	Metagenome / Metatranscriptome	283	Y
F037567	Metagenome / Metatranscriptome	167	N
F040587	Metagenome	161	Y
F053106	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334977_0007544_1391_1645	F037567	GAGG	MEWISFFGPRRPINGQKVYYFGEYIGVWQGRYEIHRDDPVSEHILICEESPGIVDRMDAPWWMPYEGQPKPKRPESDYPKDYPK
Ga0334977_0007544_2670_3062	F012108	AGG	MINLQLSVREAMDLAANCNHSRPDMFERIVNAFEVALGVNQRCTVTITGGMTLDNRIKCIKAIRLHTGWGLKEAKDWSDVLVGEWKYDTFVHTFVPATHGTKNSITLSTPEAAENLLRDLVEEGCEGFLS
Ga0334977_0007544_3822_4526	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPSDCDYLNNGCYAEATENQYKNARTAGFANIITEKHKIRAMILDAKKRNKSIRWHERGDWFLNGELDTNYVENVTWACKSILADGDSLPDMWFYTHIYDSRLVSLEKYMNVYASVHDTNDMNEAKSNGFKLFAWCDSDMKIAPKRPKSKVKAEAWRKELPKLVVLNGEKFVTCPEIRRGRSVITCTGTKDSISCDMCVKGLANVLFPAH
Ga0334977_0007544_4773_5021	F053106	GGAG	MAKFYVKSGTLEVIISRKDALEASIAGLLMTNKFDTIDEYFYADERGYRNYISADNTTNVIPTKSIVRAAGWELSRDDDPLP
Ga0334977_0007544_5094_5384	F040587	N/A	MEKRLTRGGIMIQWIGVLITLLGLAYTGVKDYQKGEIKIPTIQKPLTVVKYPIQYCLMAYDPNLDKVFYLHENGQWYDYAPQQRRYASTTQVRQRY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334977_0007544

Overview

Ecosystem & Geography

Associated Families

Sequences