Scaffold Ga0334977

Basic Information
Taxon OID	3300033978 Open in IMG/M
Scaffold ID	Ga0334977_0006534 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6652
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F009684	Metagenome	314	Y
F054038	Metagenome / Metatranscriptome	140	Y
F097333	Metagenome	104	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

603

Metagenome

314

Metagenome / Metatranscriptome

140

Metagenome

104

Protein ID	Family	RBS	Sequence
Ga0334977_0006534_1_432	F054038	N/A	MAYKNNGVFNVLYKTRNKIARTLRNIIAEEALIDTGALYDSIRINAQIPALGELEIQINAMYYFGFLNNGTVNMLPFDLCAKLTDRLNAQGITAEIYAQYTEWMTKRYPILQVARILGDKRSIIYSFAPIDGDFNAALKFRGFV
Ga0334977_0006534_2494_2865	F097333	N/A	MAIYNQSWLHTIAHDLLAPDVDANLWQSICLHYGITETVNGTWLEALCEFFDVNKEVGEAWIQALAEDFGATGPVNGSWIQALALQIEANADLIEIFMDRIATDGGVFEAETCLEITLNSFDI
Ga0334977_0006534_2879_3328	F002018	AGG	MTSYQALINEITDFYNNHVQVHKVGSDFQEQMTNFATKDEKYPIVFIVPVSALATENTNDFVLDIFCFDIIQKDRANINVILSDCQQILYDLFTYFINSTNYNFDFVDAPTFTPLNNDLLDYAAGWVMSATFCVNNWTDCAVPLKQPEE
Ga0334977_0006534_416_781	F009684	N/A	MENIFKLTYSDKATALADLKAKGILVEVEFNGEKHEAYGNGVQAVVEIGLIMVTPPVMEGMEIVTPPVYADGYHYDVMSSELYDFGANLVEPKNPKHAFAGHATTEEFPYEPQFLGDGVQ

Protein ID

Family

RBS

Sequence

Ga0334977_0006534_1_432

N/A

MAYKNNGVFNVLYKTRNKIARTLRNIIAEEALIDTGALYDSIRINAQIPALGELEIQINAMYYFGFLNNGTVNMLPFDLCAKLTDRLNAQGITAEIYAQYTEWMTKRYPILQVARILGDKRSIIYSFAPIDGDFNAALKFRGFV

Ga0334977_0006534_2494_2865

N/A

MAIYNQSWLHTIAHDLLAPDVDANLWQSICLHYGITETVNGTWLEALCEFFDVNKEVGEAWIQALAEDFGATGPVNGSWIQALALQIEANADLIEIFMDRIATDGGVFEAETCLEITLNSFDI

Ga0334977_0006534_2879_3328

AGG

MTSYQALINEITDFYNNHVQVHKVGSDFQEQMTNFATKDEKYPIVFIVPVSALATENTNDFVLDIFCFDIIQKDRANINVILSDCQQILYDLFTYFINSTNYNFDFVDAPTFTPLNNDLLDYAAGWVMSATFCVNNWTDCAVPLKQPEE

Ga0334977_0006534_416_781

N/A

MENIFKLTYSDKATALADLKAKGILVEVEFNGEKHEAYGNGVQAVVEIGLIMVTPPVMEGMEIVTPPVYADGYHYDVMSSELYDFGANLVEPKNPKHAFAGHATTEEFPYEPQFLGDGVQ

NMPFamsDB